rs213745026 SNP Detail

Summary

• ID
  rs213745026
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172392646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGAGGCC GGCGGCCAGG
  CTGCGGGAGC GCACCGCACC CGCACGACCT CGAGGGGCTG CCCCTGCGTG CATGCCCGGG
  CGGCTTCCGC TAGGGGGCGA CAGTGCCCCG CTCCTGTGTC CCTGCTACCC TTCTGACCCC
  TGGGACTGAT GAAGACACAT CTTTTAGGAA TTAAGTCTGA CCGCCTTGGG GCGAGGGGAC
  R
  TGCGCAGGCA AAGGTTGCCC AGTTTGGCAG AGTCTTTTCA TTCCTTCTCT ACACCGGGAT
  GTGTGAGAAC CTTGACCATG GCCGGGCTGG AAGACCTCAC TTCCTAAGGC GCAGAAGGCA
  CGGGCTTGGC TAGCAAGGAT CACAGCTCCG ATCCCGCGTG TCGGCTCCCG GTCTCTCCGG
  ACGACATTAC TATGAGGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356643200	MGP_WTSI_2_172376226	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213745026					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356643200	MGP_WTSI_2_172376226	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172392646 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12824	CpG island 12824			1724 bp distal
Cpgi12825	CpG island 12825			within coordinates
Rr571697	regulatory region 571697			1123 bp distal
Rr571698	regulatory region 571698			within coordinates
Rr571699	regulatory region 571699			97 bp distal
Tfap2c	transcription factor AP-2, gamma			Coding-NonSynonymous
				Intron
				Noncoding-Transcript-Variant
Tssr21966	transcription start site region 21966			1121 bp downstream
Tssr21967	transcription start site region 21967			1077 bp downstream
Tssr21968	transcription start site region 21968			35 bp upstream
Tssr21969	transcription start site region 21969			302 bp upstream
Tssr21970	transcription start site region 21970			777 bp upstream
Tssr21971	transcription start site region 21971			796 bp upstream
Tssr27948	transcription start site region 27948			209 bp downstream