rs213608816 SNP Detail

Summary

• ID
  rs213608816
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:5284932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCGGCAGGC CCTGGCGGCT CTTGGCTGCA
  CGGGCGCTGC GGACCTGGTA GGTCCGTTAG GAGGCGGGAT CTCCCGGCCT ATGTCCGCAG
  ACCTGGGAGT GGAGGCAGCT CGCCCCGGGG TTTGGGGATT GATCGCCACA CTAAGAGGAC
  M
  CCCGCGGCTG GAGATCAAGA GCCTTTGCTT TCTTTTTTGG TAAAGGGCAA GGgtgtgtgt
  gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtAA AGGAGATGTG GCTGACTGTG
  GGAATTGATG CATTTTacac acacacacac                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320637701	CHEV_3_5219872	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213608816					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5284932 () rs orientation: forward

Symbol	Name	Function Class
2700069I18Rik	RIKEN cDNA 2700069I18 gene	within coordinates
Rr573172	regulatory region 573172	1308 bp distal
Rr573173	regulatory region 573173	within coordinates
Rr573174	regulatory region 573174	1046 bp proximal
Rr573175	regulatory region 573175	1573 bp proximal
Tssr28265	transcription start site region 28265	1328 bp downstream
Tssr28266	transcription start site region 28266	1311 bp downstream
Tssr28267	transcription start site region 28267	1285 bp downstream
Tssr28268	transcription start site region 28268	1258 bp downstream
Tssr28269	transcription start site region 28269	1188 bp downstream
Tssr28270	transcription start site region 28270	1042 bp downstream
Tssr28271	transcription start site region 28271	836 bp downstream
Tssr28272	transcription start site region 28272	819 bp downstream
Tssr28273	transcription start site region 28273	798 bp downstream
Tssr28274	transcription start site region 28274	1176 bp upstream
Tssr28275	transcription start site region 28275	1317 bp upstream
Tssr28276	transcription start site region 28276	1353 bp upstream
Tssr32523	transcription start site region 32523	899 bp downstream
Zfhx4	zinc finger homeodomain 4	Intron