rs213495210 SNP Detail

Summary

• ID
  rs213495210
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:101166913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTACAAAA TGACAAGGTT
  AGGGGGCTGG AGAGATGGCT CAGGGGCTAA GAGCACCCAT GTGGCAGTTT GCAACTGTCT
  GTAACTCCTG TTCCAGGGGG GATCTGACAC CCTCACACGG ACAAACATGC AGGCAAAACA
  CCTATTGGCA TGGAAAATGA AAATAAATGA CCGGGTTAGC TGAGAAATTC CTTTTGAGAG
  Y
  TGTCTTTTCT CCAGTCCAGA GACTGCTCTC TGGATCTTCC TGCTCAGTTC CTCGCCTCCC
  TTCAATATAT GGTATTTAAG GTTTTACTTT TTTTTGCGTT TTCAATTGTT TTTAATTGTA
  TTTATATGTG TCTCTGTGTG TGCACATGAG CATGGGTGTC CTACAAGGCT AGAGACATCA
  GATGTCCTGG AGCTAGAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395192967	MGP_WTSI_15_101099463	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213495210					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395192967	MGP_WTSI_15_101099463	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101166913 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nr4a1	nuclear receptor subfamily 4, group A, member 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr370021	regulatory region 370021			1072 bp downstream
Rr510002	regulatory region 510002			460 bp distal
Rr510003	regulatory region 510003			1824 bp distal
Tssr133215	transcription start site region 133215			1920 bp downstream
Tssr133216	transcription start site region 133216			1889 bp downstream
Tssr133217	transcription start site region 133217			1786 bp downstream
Tssr133218	transcription start site region 133218			1158 bp downstream
Tssr133219	transcription start site region 133219			1136 bp downstream
Tssr133220	transcription start site region 133220			1041 bp downstream
Tssr133221	transcription start site region 133221			981 bp downstream
Tssr133222	transcription start site region 133222			355 bp upstream
Tssr133223	transcription start site region 133223			1044 bp upstream
Tssr133224	transcription start site region 133224			1087 bp upstream
Tssr133225	transcription start site region 133225			1098 bp upstream
Tssr133226	transcription start site region 133226			1119 bp upstream
Tssr133227	transcription start site region 133227			1127 bp upstream
Tssr133228	transcription start site region 133228			1145 bp upstream
Tssr133229	transcription start site region 133229			1156 bp upstream
Tssr133230	transcription start site region 133230			1234 bp upstream
Tssr133231	transcription start site region 133231			1266 bp upstream
Tssr133232	transcription start site region 133232			1285 bp upstream
Tssr133233	transcription start site region 133233			1313 bp upstream
Tssr133234	transcription start site region 133234			1331 bp upstream
Tssr133235	transcription start site region 133235			1364 bp upstream
Tssr133236	transcription start site region 133236			1413 bp upstream
Tssr133237	transcription start site region 133237			1435 bp upstream
Tssr133238	transcription start site region 133238			1468 bp upstream
Tssr133239	transcription start site region 133239			1510 bp upstream
Tssr133240	transcription start site region 133240			1602 bp upstream
Tssr133241	transcription start site region 133241			1619 bp upstream
Tssr133242	transcription start site region 133242			1627 bp upstream
Tssr133243	transcription start site region 133243			1653 bp upstream
Tssr133244	transcription start site region 133244			1674 bp upstream
Tssr133245	transcription start site region 133245			1718 bp upstream
Tssr133246	transcription start site region 133246			1743 bp upstream
Tssr133247	transcription start site region 133247			1831 bp upstream
Tssr133248	transcription start site region 133248			1851 bp upstream
Tssr136545	transcription start site region 136545			1267 bp downstream
Tssr136546	transcription start site region 136546			1389 bp downstream
Tssr136547	transcription start site region 136547			1465 bp downstream
Tssr136548	transcription start site region 136548			1475 bp downstream
Tssr136549	transcription start site region 136549			1509 bp downstream
Tssr136550	transcription start site region 136550			1615 bp downstream
Tssr136551	transcription start site region 136551			1691 bp downstream