rs213083650 SNP Detail

Summary

• ID
  rs213083650
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138186198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAG GTCCTGTGTC CCCACCTCCT
  C
  GCCTCCTACC CCTCCCCCAA CCCTT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321373809	CHEV_4_138014802	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213083650					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138186198 () rs orientation: forward

Symbol	Name	Function Class
Camk2n1	calcium/calmodulin-dependent protein kinase II inhibitor 1	mRNA-UTR
Rr377275	regulatory region 377275	513 bp downstream
Rr602933	regulatory region 602933	1943 bp distal
Rr602934	regulatory region 602934	942 bp proximal
Rr602935	regulatory region 602935	1018 bp proximal
Tssr39865	transcription start site region 39865	1827 bp downstream
Tssr39866	transcription start site region 39866	1507 bp downstream
Tssr39867	transcription start site region 39867	1268 bp downstream
Tssr39868	transcription start site region 39868	1198 bp downstream
Tssr39869	transcription start site region 39869	970 bp downstream
Tssr39870	transcription start site region 39870	941 bp downstream
Tssr39871	transcription start site region 39871	885 bp downstream
Tssr44167	transcription start site region 44167	1820 bp upstream
Tssr44168	transcription start site region 44168	1738 bp upstream
Tssr44169	transcription start site region 44169	1644 bp upstream
Tssr44170	transcription start site region 44170	1032 bp downstream