rs213058215 SNP Detail

Summary

• ID
  rs213058215
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:104125924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGG AGATCGAGGG AGGGAGGAGG
  R
  AGAAGTGGGG GGAGGGAAGA GGAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320859621	CHEV_3_104022531	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213058215					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104125924 () rs orientation: forward

Symbol	Name	Function Class
2010002M09Rik	RIKEN cDNA 2010002M09 gene	1995 bp upstream
Cpgi13643	CpG island 13643	618 bp proximal
Gm66179	predicted gene, 66179	1051 bp upstream
Magi3	membrane associated guanylate kinase, WW and PDZ domain containing 3	Intron
Rr397911	regulatory region 397911	1749 bp upstream
Rr582475	regulatory region 582475	561 bp proximal
Rr582476	regulatory region 582476	1485 bp proximal
Tssr34876	transcription start site region 34876	1738 bp downstream
Tssr34877	transcription start site region 34877	1752 bp downstream