rs212784848 SNP Detail

Summary

• ID
  rs212784848
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152337365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGACTCTGA GGAATTCTCA CTTTCCATTT
  GGATCTGATG GAGCTCGCAA GTTTACGCGA AGAGCCAGAG AGCCTCAGCT TGTCCTGAAG
  GGATGCACAC GTGTCCTGTG CTTTCAATTG GATGTCTTTG TATTCTTATG GTGAATATGA
  W
  TGAATCTCGT GGTGGAACAT GCCCCTCACT GGTACATTAT CTTGCAGGAC TATGAAAAAA
  GAACCATTAA CGCACGCCTC ATGTCTCCTC CAGGAAACCG CACCTGAGCC TCTCCTGCTT
  CGGCCTGTCT GAGTATCCCT GAGCCCACAT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320065966	CHEV_1_154308744	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212784848					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152337365 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Colgalt2	collagen beta(1-O)galactosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420465	regulatory region 420465			165 bp proximal
Rr420466	regulatory region 420466			813 bp proximal