rs212585644 SNP Detail

Summary

• ID
  rs212585644
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:53372595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTGTTTT TTGAGACAGG
  GTTTCTCTGT ATAGCCCTGG CTGTCCTGGA GCTCACTTTG TAGACCAGGT TGGCCTCGGA
  CTCAGAAATC CGCCTGCCTC TGCCTCCCGA GTGCTGGGAA TAAAGGCGGG CGCCACCACG
  ACCAGCGGAT CTAGAGTTTT GTTTTGCTCT TTGTAAGACC CCTTTTCCTC CCTTCCCCCC
  W
  TTTCAGATAA CATATATTTA ATCTTTCATA TTTGGTGGTG CTGAATTTTT TTCTTTTCAA
  ATAAACTTCT GCACTTGCTG AGTCTCATCT AATTAAAATT TGAAACAAAA TGTCTTTTTA
  TCATGTACTT AGAATTTGCC ACAGTTGGTT TCTGAGCTGT TTTTTAACCA TTCTGAGAAA
  ATAAATTTTA AGTTAAGGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320768452	CHEV_3_53269096	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212585644					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:53372595 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13163	CpG island 13163	1127 bp distal
Nhlrc3	NHL repeat containing 3	1916 bp upstream
Proser1	proline and serine rich 1	Intron
Rr374971	regulatory region 374971	654 bp downstream
Rr576697	regulatory region 576697	1498 bp distal
Rr576698	regulatory region 576698	1562 bp distal
Rr576699	regulatory region 576699	489 bp distal
Rr576700	regulatory region 576700	1285 bp proximal
Tssr29113	transcription start site region 29113	1584 bp downstream
Tssr29114	transcription start site region 29114	1493 bp downstream
Tssr29115	transcription start site region 29115	1465 bp downstream
Tssr29116	transcription start site region 29116	1352 bp downstream
Tssr29117	transcription start site region 29117	1268 bp downstream
Tssr33269	transcription start site region 33269	1942 bp upstream
Tssr33270	transcription start site region 33270	1868 bp upstream