rs212483742 SNP Detail

Summary

• ID
  rs212483742
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:28078639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAT CCATGGTGGC GCGAATGGCC
  D
  TGGTGAAGAG ACCGACTGTC GGTTC                                      
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss918617880	MGP_WTSI_7_28379214	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212483742					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918617880	MGP_WTSI_7_28379214	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28078639 () rs orientation: forward

Symbol	Name	Function Class
Gm44710	predicted gene 44710	within coordinates
Gm57214	predicted gene, 57214	1198 bp downstream
Rr368284	regulatory region 368284	1320 bp upstream
Rr400210	regulatory region 400210	within coordinates
Rr644240	regulatory region 644240	1260 bp distal
Rr644241	regulatory region 644241	224 bp distal
Rr644242	regulatory region 644242	within coordinates
Rr644243	regulatory region 644243	31 bp proximal
Rr644244	regulatory region 644244	916 bp proximal
Rr644245	regulatory region 644245	1029 bp proximal
Rr644246	regulatory region 644246	1545 bp proximal
Tssr2163	transcription start site region 2163	142 bp downstream
Tssr2164	transcription start site region 2164	275 bp downstream
Tssr2165	transcription start site region 2165	318 bp downstream
Tssr65463	transcription start site region 65463	1719 bp downstream
Tssr65464	transcription start site region 65464	1161 bp downstream
Tssr65465	transcription start site region 65465	138 bp upstream
Tssr71493	transcription start site region 71493	1995 bp upstream
Tssr71494	transcription start site region 71494	1960 bp upstream
Tssr71495	transcription start site region 71495	1930 bp upstream
Tssr71496	transcription start site region 71496	1583 bp upstream
Tssr71497	transcription start site region 71497	1335 bp upstream
Tssr71498	transcription start site region 71498	1274 bp upstream
Tssr71499	transcription start site region 71499	1180 bp upstream
Tssr71500	transcription start site region 71500	1156 bp upstream
Tssr71501	transcription start site region 71501	1129 bp upstream
Tssr71502	transcription start site region 71502	1104 bp upstream
Tssr71503	transcription start site region 71503	1063 bp upstream
Tssr71504	transcription start site region 71504	1032 bp upstream
Tssr71505	transcription start site region 71505	1015 bp upstream
Tssr71506	transcription start site region 71506	1001 bp upstream
Tssr71507	transcription start site region 71507	954 bp upstream
Tssr71508	transcription start site region 71508	920 bp upstream
Tssr71509	transcription start site region 71509	860 bp upstream
Tssr71510	transcription start site region 71510	816 bp upstream
Tssr71511	transcription start site region 71511	780 bp upstream
Tssr71512	transcription start site region 71512	700 bp upstream
Tssr71513	transcription start site region 71513	113 bp upstream
Tssr71514	transcription start site region 71514	11 bp downstream
Tssr71515	transcription start site region 71515	33 bp downstream
Tssr71516	transcription start site region 71516	1067 bp downstream
Tssr71517	transcription start site region 71517	1713 bp downstream
Tssr71518	transcription start site region 71518	1735 bp downstream
Tssr71519	transcription start site region 71519	1756 bp downstream
Tssr71520	transcription start site region 71520	1800 bp downstream
Tssr71521	transcription start site region 71521	1812 bp downstream
Tssr71522	transcription start site region 71522	1854 bp downstream
Zfp36	zinc finger protein 36	mRNA-UTR