rs212393384 SNP Detail

Summary

• ID
  rs212393384
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17086049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGATTCTC TTCTTTTCTT GATAAAAGCA
  ATGAGATTAT AAAGAATGCT ATATATGTTC TCAAAGCTTA TGTTTACATG CCTGGGTCAG
  AGTTGGCTAA ACAATGTGAA ACTCATAAAA GATTTGTTTG AGAGTTACAT CAACAAGAGC
  R
  TTAAGTGGAA TTAGAGGTGT Gatttattga atttttaaaa atgtaaaaaa tttataataG
  ATTCCCTTTG TTCTTCCCAT TAACAGATGG GCTTAGGTCA TGAGCAAGGA TTTGGAGCCC
  CCTGTCTAAA ATGCAAAGAG AACTGTGAAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321753482	CHEV_6_17036050	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212393384					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17086049 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm4876	predicted gene 4876			within coordinates
Rr626762	regulatory region 626762			1495 bp proximal
Rr626763	regulatory region 626763			1645 bp proximal
Tes	testin LIM domain protein			Intron
				Noncoding-Transcript-Variant