rs212200234 SNP Detail

Summary

• ID
  rs212200234
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123273652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCTGAAG GTTTTTGTTC
  AACTTTCCCT CCTGGTTCCC ATTGGCACGG AACAATCCGA GAAAACACTG GGGGCCGTGG
  AGAGCGGGGA TGGCGGGTCC TCCGACCCAC CTCGGTTGCA GAGAGTCTAA AAAGGTCATA
  TTCCAAACTT GGGCTCGGGG CCAGGTGGAG GAGCCGGAAG GGGCGGGGAC ACTGGAATCT
  Y
  GTGTAGTAAA TCGAGTACAG CCACCTCCCA GTTCAGGCAA GCCTTCTGCT GGCGTGGCCC
  TCTCTCTGCA GGCCAGAGCG GCTCCGCCCC ACGCTCCGTG GGTGACCAGG AGGCGGGGCA
  CCCCTCGGGG CCAGGAACAA CAGCAGGACA AACTGCCCCA CCCTACAGCC CAGGAGGTGA
  TAAGGGGCCA AAGAAAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366533296	MGP_WTSI_5_123585598	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212200234					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366533296	MGP_WTSI_5_123585598	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123273652 () rs orientation: forward

Symbol	Name	Function Class
AI480526	expressed sequence AI480526	within coordinates
Cpgi16574	CpG island 16574	within coordinates
Gm38102	predicted gene, 38102	within coordinates
Rr378574	regulatory region 378574	within coordinates
Rr399341	regulatory region 399341	1809 bp downstream
Rr620106	regulatory region 620106	1640 bp distal
Rr620107	regulatory region 620107	1993 bp distal
Rr620108	regulatory region 620108	754 bp distal
Rr620109	regulatory region 620109	within coordinates
Rr620110	regulatory region 620110	581 bp proximal
Rr620111	regulatory region 620111	1133 bp proximal
Rr620112	regulatory region 620112	1575 bp proximal
Tssr48758	transcription start site region 48758	28 bp upstream
Tssr48759	transcription start site region 48759	202 bp upstream
Tssr48760	transcription start site region 48760	244 bp upstream
Tssr48761	transcription start site region 48761	1050 bp upstream
Tssr53204	transcription start site region 53204	1416 bp upstream
Tssr53205	transcription start site region 53205	59 bp upstream
Tssr53206	transcription start site region 53206	30 bp upstream
Tssr53207	transcription start site region 53207	949 bp downstream