rs212171657 SNP Detail

Summary

• ID
  rs212171657
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:131987192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGAACCTG GGCATCTGAG
  GCAAGACTAC CATAAGTTCA AAGCCAGCCA GGGCTACATA GTGAGCCCCG GTGTCAAATA
  ACTAACATAC AGAGCAGCCT GGCATATTTT GGAGGCAGAG GCAGGTGAAA TCTCTTTTGA
  GTTTGACACC AGCCAAACTA AAAGGAGACT TTATCTCAAA AAGAAACAAA CAAAAGCCAG
  R
  CAATGATGGC ATATGCCCTT AATCCCAGCG CTCGTAAGGC AGAGGCAGGT AAATCTCTTG
  AGTGCAAGGC CAGTAAGGAC TACAGAGATA CCCTGTCTCA AATACCTAAA CAATTGGAGG
  CCAGTTCCAA AACAGCCAGA GCCACACAGA GAAACCCAGT CTCAAATAAA TAGCCAAAAC
  CAACAACAAG TCTCCAATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321331983	CHEV_4_131815796	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212171657					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131987192 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14953	CpG island 14953			855 bp proximal
Gm28874	predicted gene 28874			655 bp upstream
Gmeb1	glucocorticoid modulatory element binding protein 1			Intron
				mRNA-UTR
Rr600911	regulatory region 600911			505 bp proximal
Rr600912	regulatory region 600912			658 bp proximal
Rr600913	regulatory region 600913			1630 bp proximal
Tssr39362	transcription start site region 39362			623 bp upstream
Tssr39363	transcription start site region 39363			640 bp upstream
Tssr43650	transcription start site region 43650			1645 bp downstream
Tssr43651	transcription start site region 43651			1715 bp downstream