rs212107890 SNP Detail

Summary

• ID
  rs212107890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122037857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAGGGTC TACAAATGTA
  CATCTCAGAA ACAACGTGAA GTCCTCCGTG CACTCCTGAG TGTGCCAGCC TGTGATAGTC
  AGGTTATAAC AGGAGAGAGT AGAATACAAC AACAATTTTG AGGGCTAGGG ATGCCCACTG
  TCAGAACGCA TGTGTAAGCC TTCGACCCCA GCACCATAAA TAGTAGTTCT CACTTACTGA
  R
  CATTTATTAT AAGCCAAGTA CTGAACTAAG GACTCACCAT ACCTTCTCTT AGTAACTCAT
  CACAACTACC TACCCAACGG CAGATCTGAT GTCCTGTGGC CTCCAGGGGC CCTGAACGGT
  GCCCATAAAC TCATGGAAGA AAACACACAT ACACACAAAT AAACAATATT TTTGTATGTT
  TGTTTTGAGA CAGAGTCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359496000	MGP_WTSI_3_121947126	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212107890					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359496000	MGP_WTSI_3_121947126	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122037857 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13765	CpG island 13765	1009 bp proximal
Gclm	glutamate-cysteine ligase, modifier subunit	1349 bp upstream
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	398 bp downstream
Rr375675	regulatory region 375675	within coordinates
Rr397979	regulatory region 397979	991 bp upstream
Rr584261	regulatory region 584261	1094 bp distal
Rr584262	regulatory region 584262	356 bp distal
Rr584263	regulatory region 584263	989 bp distal
Rr584264	regulatory region 584264	within coordinates
Rr584265	regulatory region 584265	534 bp proximal
Rr584266	regulatory region 584266	1132 bp proximal
Rr584267	regulatory region 584267	1265 bp proximal
Tssr1039	transcription start site region 1039	1535 bp upstream
Tssr31477	transcription start site region 31477	1079 bp downstream
Tssr31478	transcription start site region 31478	1268 bp upstream
Tssr31479	transcription start site region 31479	1355 bp upstream
Tssr31480	transcription start site region 31480	1373 bp upstream
Tssr31481	transcription start site region 31481	1402 bp upstream
Tssr31482	transcription start site region 31482	1417 bp upstream
Tssr31483	transcription start site region 31483	1568 bp upstream
Tssr31484	transcription start site region 31484	1702 bp upstream
Tssr35443	transcription start site region 35443	1011 bp downstream
Tssr35444	transcription start site region 35444	1094 bp downstream