rs211976645 SNP Detail

Summary

• ID
  rs211976645
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146192227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGATAAG AAATATAATT
  ACAAAGCAAT ACCCTGCAGC TGTAATGGAT ACTGTCATTA GTTTTGGGGA GATATATTTC
  ACTTACATAT ACTATACCAA TTTTGCCCTT GCATACCTTA TTTGCCTATG AAATATGATG
  AAAATGTTCA ACTGACATTT TTCTATATAG TTCTGTTTCT GTAAACTTAC TTTAATGAAA
  G
  TATTTTGGTT ATTTGCCACT TTGTGTACAT GTGTATATGT AGGTGCACCC GTGTGTATGG
  GTGTGTGTAC ACATGTGCAT GTGGAGACCA GAAGTCAATC TTAAGTGTCC TTCTTCAAGT
  GCCATCTACC TCCGTGTGTG CCTGTGTGGG GTTATAGACA GGTACAGGTG TCTATGGAGA
  CCAGAAGAGG GCAGCACATC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321010518	CHEV_3_146149436	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs211976645					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146192227 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587033	regulatory region 587033			107 bp proximal
Rr587034	regulatory region 587034			116 bp proximal
Rr587035	regulatory region 587035			177 bp proximal
Spata1	spermatogenesis associated 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant