rs211704064 SNP Detail

Summary

• ID
  rs211704064
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148087182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGATGGGT GGCCAGTTCA
  AACGATTTGT GGGCTACCCC ACTGCTGCGT CACCACCTAT CCACGTGTAT CACTCGGTGC
  TGGAGATCAA ACTCAGGGAG CCAGAGGCAT TTGAAAATAG CCACAATCTC CCTAACACAG
  GACTGTGGAG CTTCAACTTG TACGTTGCGT GGAGGAGAGA ACCACCAGGA AACATGCAGT
  R
  CCTTATTTAC TTTTAGTTTA TGTAGCTTTG GCTGGCCTCA GACTCTAGGA GACCTGCCTT
  GCTACATTAC CAAGTCTGGC TAAGGTGCAG TGTTTTTATA CCAGCTTGTG AAAGGCACTG
  CTCTAAGCAG AGAACACATT CAGGGCTCAT AGTGAACACT GCTTCTTCTC TGAGATCACT
  CAGGTCATCT TATAGCTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321416345	CHEV_4_147376834	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs211704064					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148087182 () rs orientation: forward

Symbol	Name	Function Class
Clcn6	chloride channel, voltage-sensitive 6	1534 bp downstream
Gm13054	predicted gene 13054	within coordinates
Nppa	natriuretic peptide type A	651 bp downstream
Rr407043	regulatory region 407043	1165 bp distal
Rr604546	regulatory region 604546	1993 bp distal
Rr604547	regulatory region 604547	1004 bp distal
Rr604548	regulatory region 604548	1684 bp proximal
Tssr40240	transcription start site region 40240	1971 bp downstream
Tssr40241	transcription start site region 40241	1614 bp downstream
Tssr40242	transcription start site region 40242	1387 bp downstream
Tssr40243	transcription start site region 40243	921 bp downstream
Tssr40244	transcription start site region 40244	718 bp downstream
Tssr44568	transcription start site region 44568	650 bp upstream