rs16816493 SNP Detail

Summary

• ID
  rs16816493
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:70130080 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CATCT GCTCCCATGA TAATGACGCG
  Y
  CTCGGAGAGC TGTTTGCCAT ATACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24771846	D11Bwg0434e_AN6677_13	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16816493					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70130080 () rs orientation: reverse

Symbol	Name	Function Class
Bacc1	BPTF associated chromatin complex component 1	1340 bp upstream
Gm21988	predicted gene 21988	Intron
Gm40191	predicted gene, 40191	within coordinates
Gm73643	predicted gene, 73643	522 bp downstream
Rnasek	ribonuclease, RNase K	Intron
Rr402689	regulatory region 402689	1133 bp downstream
Rr402690	regulatory region 402690	727 bp upstream
Rr450255	regulatory region 450255	1248 bp distal
Rr450256	regulatory region 450256	within coordinates
Rr450257	regulatory region 450257	578 bp proximal
Rr450258	regulatory region 450258	879 bp proximal
Tssr102675	transcription start site region 102675	1223 bp downstream
Tssr108925	transcription start site region 108925	1654 bp upstream
Tssr108926	transcription start site region 108926	1621 bp upstream
Tssr108927	transcription start site region 108927	1603 bp upstream
Tssr108928	transcription start site region 108928	1473 bp upstream
Tssr108929	transcription start site region 108929	1369 bp upstream
Tssr108930	transcription start site region 108930	1335 bp upstream
Tssr108931	transcription start site region 108931	932 bp upstream
Tssr108932	transcription start site region 108932	866 bp upstream
Tssr108933	transcription start site region 108933	834 bp upstream
Tssr108934	transcription start site region 108934	779 bp upstream
Tssr108935	transcription start site region 108935	284 bp upstream
Tssr108936	transcription start site region 108936	35 bp upstream
Tssr108937	transcription start site region 108937	453 bp downstream
Tssr108938	transcription start site region 108938	512 bp downstream
Tssr108939	transcription start site region 108939	540 bp downstream