rs16805557 SNP Detail

Summary

• ID
  rs16805557
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:98304464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                 TTTGCAT TCATCCCTGC
  TGAGATCCAA AGGGTTGGCC ACACAACAGG CATTGCTGCT TNTGTNTGGT AGCCCCAAAG
  AGCTTGTCCT CCCTATCAGA GGAAAAACAA ATCACATTAC CAATGTATAC GCAAGGATAT
  ATTGAAAGCC TTCGACTGGC TACAAACTAA GATTGAAAAG ATAACTCATA CCATTTTNAT
  CTCCACACTC CAGCTCCTGA CAAAGGAAAA AAAACACCAT TTGAGAGCAC AATGACCCAG
  NTCATACTAA CAGGGGAAAG AACAGGTTTT AAAGTCAAAC ACTTCTTGGT TCCAGTTCCA
  GCTTTACAAC ATAATTAGTT GTTTCATCCT TGTGAATTGG CCTCTCTGAA CCCAATTTGT
  ATGCCtttat tttaaaaaaa aaaaaaaaaa aGTAATCCCA CNAAGTTTGT TTCAAGTATT
  ATTTAAAAAA CGGGGCAAGC CAAGTTCTGT CATAGNGGCT GGCATATGAC TTGCCAAACA
  R
  ACTCTACCAC CTGTGCAACC TTGAACAAGT GATT                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LP/J	MRL/MpJ	NZW/Lac
ss24760415	Emsy_JC10356_5	ROCHEBIO	RPAMM	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	LP/J	MRL/MpJ	NZW/Lac
rs16805557					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:98304464 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930558N01Rik	RIKEN cDNA 4930558N01 gene			894 bp upstream
Emsy	EMSY, BRCA2-interacting transcriptional repressor			Intron
				Noncoding-Transcript-Variant
Rr368380	regulatory region 368380			1397 bp upstream
Rr651647	regulatory region 651647			404 bp proximal
Rr651648	regulatory region 651648			905 bp proximal
Rr651649	regulatory region 651649			1065 bp proximal
Rr651650	regulatory region 651650			1279 bp proximal
Rr651651	regulatory region 651651			1353 bp proximal
Rr651652	regulatory region 651652			1673 bp proximal
Tssr68028	transcription start site region 68028			560 bp upstream
Tssr68029	transcription start site region 68029			888 bp upstream
Tssr68030	transcription start site region 68030			917 bp upstream
Tssr68031	transcription start site region 68031			1644 bp upstream
Tssr73641	transcription start site region 73641			1258 bp downstream
Tssr73642	transcription start site region 73642			1273 bp downstream
Tssr73643	transcription start site region 73643			1535 bp downstream