rs16805556 SNP Detail

Summary

• ID
  rs16805556
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:98304439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

          TT TGCATTCATC CCTGCTGAGA TCCAAAGGGT TGGCCACACA ACAGGCATTG
  CTGCTTNTGT NTGGTAGCCC CAAAGAGCTT GTCCTCCCTA TCAGAGGAAA AACAAATCAC
  ATTACCAATG TATACGCAAG GATATATTGA AAGCCTTCGA CTGGCTACAA ACTAAGATTG
  AAAAGATAAC TCATACCATT TTNATCTCCA CACTCCAGCT CCTGACAAAG GAAAAAAAAC
  ACCATTTGAG AGCACAATGA CCCAGNTCAT ACTAACAGGG GAAAGAACAG GTTTTAAAGT
  CAAACACTTC TTGGTTCCAG TTCCAGCTTT ACAACATAAT TAGTTGTTTC ATCCTTGTGA
  ATTGGCCTCT CTGAACCCAA TTTGTATGCC tttattttaa aaaaaaaaaa aaaaaaGTAA
  TCCCACNAAG TTTGTTTCAA GTATTATTTA AAAAACGGGG CAAGCCAAGT TCTGTCATAG
  K
  GGCTGGCATA TGACTTGCCA AACANACTCT ACCACCTGTG CAACCTTGAA CAAGTGATT 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	DBA/2J	LP/J	MOLF	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24760414	Emsy_JC10356_4	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	G	T	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	DBA/2J	LP/J	MOLF	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16805556					SNP	T	T	T	T	T	T	T	G	T	G	T	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:98304439 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930558N01Rik	RIKEN cDNA 4930558N01 gene			919 bp upstream
Emsy	EMSY, BRCA2-interacting transcriptional repressor			Intron
				Noncoding-Transcript-Variant
Rr368380	regulatory region 368380			1422 bp upstream
Rr651647	regulatory region 651647			429 bp proximal
Rr651648	regulatory region 651648			930 bp proximal
Rr651649	regulatory region 651649			1090 bp proximal
Rr651650	regulatory region 651650			1304 bp proximal
Rr651651	regulatory region 651651			1378 bp proximal
Rr651652	regulatory region 651652			1698 bp proximal
Tssr68028	transcription start site region 68028			585 bp upstream
Tssr68029	transcription start site region 68029			913 bp upstream
Tssr68030	transcription start site region 68030			942 bp upstream
Tssr68031	transcription start site region 68031			1669 bp upstream
Tssr73641	transcription start site region 73641			1283 bp downstream
Tssr73642	transcription start site region 73642			1298 bp downstream
Tssr73643	transcription start site region 73643			1560 bp downstream