rs16805554 SNP Detail

Summary

• ID
  rs16805554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:98304226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTGTCTG GTAGCCCCAA
  AGAGCTTGTC CTCCCTATCA GAGGAAAAAC AAATCACATT ACCAATGTAT ACGCAAGGAT
  ATAGAAAGCC TTCGACTGGC TACAAACTAA GATTGAAAAG ATAACTCATA CCATTTTCAT
  CTCCACACTC CAGCTCCTGA CAAAGGAAAA AAAACACCAT TTGAGAGCAC AATGACCCAG
  Y
  TCATACTAAC AGGGGAAAGA ACAGGTTTTA AAGTCAAACA CTTCTTGGTT CCAGTTCCAG
  CTTTACAACA TAATTAGTTG TTTCATCCTT GTGAATTGGC CTCTCTGAAC CCAATTTGTA
  TGCCTTTATT TTAAAAAAAA AAAAAAAAAA AGTAATCCCA AGTTTGTTTC AAGTATTATT
  TAGAAAACAG GGCAAGCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24760412	Emsy_JC10356_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16805554					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:98304226 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930558N01Rik	RIKEN cDNA 4930558N01 gene			1132 bp upstream
Emsy	EMSY, BRCA2-interacting transcriptional repressor			Intron
				Noncoding-Transcript-Variant
Rr368380	regulatory region 368380			1635 bp upstream
Rr651647	regulatory region 651647			642 bp proximal
Rr651648	regulatory region 651648			1143 bp proximal
Rr651649	regulatory region 651649			1303 bp proximal
Rr651650	regulatory region 651650			1517 bp proximal
Rr651651	regulatory region 651651			1591 bp proximal
Rr651652	regulatory region 651652			1911 bp proximal
Tssr68028	transcription start site region 68028			798 bp upstream
Tssr68029	transcription start site region 68029			1126 bp upstream
Tssr68030	transcription start site region 68030			1155 bp upstream
Tssr68031	transcription start site region 68031			1882 bp upstream
Tssr73641	transcription start site region 73641			1496 bp downstream
Tssr73642	transcription start site region 73642			1511 bp downstream
Tssr73643	transcription start site region 73643			1773 bp downstream