rs16805540 SNP Detail

Summary

• ID
  rs16805540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:98305980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCC AACCTCGCTC CTCTTTCTCT
  Y
  GCTGCTTGCT GGTCACATGC GCAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24760398	Emsy_JC10354_3	ROCHEBIO	RPAMM	f	SNP	T			T	T	T	T	T	T	T	C	T	C	C	T	T	C	T	T	T	C	T	C
ss46034400	mCV24171244	ABI	CRAMUS_MOUSE	f	SNP		T	T		T							T		C
ss145478289	ENSMUSSNP6883561	ENSEMBL	ENSEMBL_Sanger	f	SNP					T									C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MOLF	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16805540					SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T	T	C	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:98305980 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930558N01Rik	RIKEN cDNA 4930558N01 gene			within coordinates
Emsy	EMSY, BRCA2-interacting transcriptional repressor			mRNA-UTR
				Noncoding-Transcript-Variant
Rr368380	regulatory region 368380			within coordinates
Rr651647	regulatory region 651647			612 bp distal
Rr651648	regulatory region 651648			238 bp distal
Rr651649	regulatory region 651649			430 bp distal
Rr651650	regulatory region 651650			within coordinates
Rr651651	regulatory region 651651			142 bp distal
Rr651652	regulatory region 651652			157 bp proximal
Tssr68028	transcription start site region 68028			920 bp downstream
Tssr68029	transcription start site region 68029			614 bp downstream
Tssr68030	transcription start site region 68030			572 bp downstream
Tssr68031	transcription start site region 68031			128 bp upstream
Tssr73641	transcription start site region 73641			249 bp upstream
Tssr73642	transcription start site region 73642			173 bp upstream
Tssr73643	transcription start site region 73643			19 bp downstream