rs16799713 SNP Detail

Summary

• ID
  rs16799713
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119336280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTTAAAA GAACTTCATT
  TAATGCTAAA AATTATTATC CATTATAGGC TCCAATTAAT CCCCCATGAC TTATGACATC
  AGCAACAACT AAGAAACAAA CTGTTGGTAT CATTCAAAAA GGACGGAGTT TGTATGTGGT
  AGCGTCAAGA ATCTTGCCAG CTCTGCTGGA GGCTGTTCCT GCCCCACTGC CCCTAAAGCA
  Y
  GGCTGCTAAC AAGGGCATCG TGAATACTTA CTTAGAGAAG AGTCGGGAGA CCCCTTCTGA
  GTGGCAGTAC ACCGTGTGGA AGAGCCATGA AAAGGAAAGG CAGAGAATGG CTCCCAAGAA
  GAACAAGCCA AAGACCACTT TCTCTTGCAG AGGGGCCACA AAAGATATAT TTGGGCGAAA
  CATATAAAAG ATCCCCAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
ss24754005	Adipor2_JC8820_5	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	SM/J	SPRET/EiJ
rs16799713					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119336280 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adipor2	adiponectin receptor 2			Intron
				Noncoding-Transcript-Variant
Rr637644	regulatory region 637644			1324 bp proximal
Tssr62709	transcription start site region 62709			168 bp downstream