rs16790823 SNP Detail

Summary

• ID
  rs16790823
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122039000 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GACAC GCCCTCTTCG AGAGGACCGC
  Y
  GGAGGTCCAT CCTCCCAGGC CTTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24743357	Gclm_AN8140_1	ROCHEBIO	RPAMM	f	SNP	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	T	C	T	T	T	C
ss320909883	CHEV_3_121948269	CHEVERUD	SCREENING_POP	r	SNP													G								A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16790823					SNP	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	T	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122039000 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13765	CpG island 13765	within coordinates
Gclm	glutamate-cysteine ligase, modifier subunit	206 bp upstream
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	1541 bp downstream
Rr375675	regulatory region 375675	874 bp downstream
Rr397979	regulatory region 397979	within coordinates
Rr584262	regulatory region 584262	1499 bp distal
Rr584264	regulatory region 584264	1082 bp distal
Rr584265	regulatory region 584265	12 bp distal
Rr584266	regulatory region 584266	within coordinates
Rr584267	regulatory region 584267	122 bp proximal
Rr584268	regulatory region 584268	871 bp proximal
Tssr1039	transcription start site region 1039	392 bp upstream
Tssr31478	transcription start site region 31478	125 bp upstream
Tssr31479	transcription start site region 31479	212 bp upstream
Tssr31480	transcription start site region 31480	230 bp upstream
Tssr31481	transcription start site region 31481	259 bp upstream
Tssr31482	transcription start site region 31482	274 bp upstream
Tssr31483	transcription start site region 31483	425 bp upstream
Tssr31484	transcription start site region 31484	559 bp upstream
Tssr35443	transcription start site region 35443	122 bp upstream
Tssr35444	transcription start site region 35444	19 bp upstream