rs16790818 SNP Detail

Summary

• ID
  rs16790818
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122038441 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGCAA AATCTTTTCA AAAGAAACAT
  K
  AATCTGAGTT GGTAAACTAC TAAGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24743347	Gclm_AN8139_2	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	T	T	G	G	G	G	G	T	G	T	T	T	G
ss45396616	mCV23980393	ABI	CRAMUS_MOUSE	r	SNP		C							C		A
ss135737751	ENSMUSSNP5451751	ENSEMBL	ENSEMBL_Sanger	r	SNP		C									A
ss320909880	CHEV_3_121947710	CHEVERUD	SCREENING_POP	r	SNP													C								A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16790818					SNP	G	G	G	G	G	G	G	G	G	T	T	G	G	G	G	G	T	G	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122038441 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13765	CpG island 13765	425 bp proximal
Gclm	glutamate-cysteine ligase, modifier subunit	765 bp upstream
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	982 bp downstream
Rr375675	regulatory region 375675	315 bp downstream
Rr397979	regulatory region 397979	407 bp upstream
Rr584261	regulatory region 584261	1678 bp distal
Rr584262	regulatory region 584262	940 bp distal
Rr584263	regulatory region 584263	1573 bp distal
Rr584264	regulatory region 584264	523 bp distal
Rr584265	regulatory region 584265	within coordinates
Rr584266	regulatory region 584266	548 bp proximal
Rr584267	regulatory region 584267	681 bp proximal
Rr584268	regulatory region 584268	1430 bp proximal
Tssr1039	transcription start site region 1039	951 bp upstream
Tssr31477	transcription start site region 31477	1663 bp downstream
Tssr31478	transcription start site region 31478	684 bp upstream
Tssr31479	transcription start site region 31479	771 bp upstream
Tssr31480	transcription start site region 31480	789 bp upstream
Tssr31481	transcription start site region 31481	818 bp upstream
Tssr31482	transcription start site region 31482	833 bp upstream
Tssr31483	transcription start site region 31483	984 bp upstream
Tssr31484	transcription start site region 31484	1118 bp upstream
Tssr35443	transcription start site region 35443	427 bp downstream
Tssr35444	transcription start site region 35444	510 bp downstream