rs16790817 SNP Detail

Summary

• ID
  rs16790817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122038487 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AACCA GTCAGGTATG TTAGAGCCAG
  R
  TGAGATTTTC ATTATAAGGC GGCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MSM	NZB/BlNJ	PERA	SM/J
ss24743346	Gclm_AN8139_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	A	A	G	G	G	A	G	A	A
ss45391762	mCV23980382	ABI	CRAMUS_MOUSE	r	SNP		C					C		T
ss135737752	ENSMUSSNP2295904	ENSEMBL	ENSEMBL_Sanger	r	SNP		C							T
ss320909881	CHEV_3_121947756	CHEVERUD	SCREENING_POP	r	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MSM	NZB/BlNJ	PERA	SM/J
rs16790817					SNP	G	G	G	G	G	G	G	A	A	G	G	G	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122038487 () rs orientation: reverse

Symbol	Name	Function Class
Gclm	glutamate-cysteine ligase, modifier subunit	719 bp upstream
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	1028 bp downstream
Rr375675	regulatory region 375675	361 bp downstream
Rr397979	regulatory region 397979	361 bp upstream
Rr584261	regulatory region 584261	1724 bp distal
Rr584262	regulatory region 584262	986 bp distal
Rr584263	regulatory region 584263	1619 bp distal
Rr584264	regulatory region 584264	569 bp distal
Rr584265	regulatory region 584265	within coordinates
Rr584266	regulatory region 584266	502 bp proximal
Rr584267	regulatory region 584267	635 bp proximal
Rr584268	regulatory region 584268	1384 bp proximal
Tssr1039	transcription start site region 1039	905 bp upstream
Tssr31477	transcription start site region 31477	1709 bp downstream
Tssr31478	transcription start site region 31478	638 bp upstream
Tssr31479	transcription start site region 31479	725 bp upstream
Tssr31480	transcription start site region 31480	743 bp upstream
Tssr31481	transcription start site region 31481	772 bp upstream
Tssr31482	transcription start site region 31482	787 bp upstream
Tssr31483	transcription start site region 31483	938 bp upstream
Tssr31484	transcription start site region 31484	1072 bp upstream
Tssr35443	transcription start site region 35443	381 bp downstream
Tssr35444	transcription start site region 35444	464 bp downstream