rs16790802 SNP Detail

Summary

• ID
  rs16790802
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122037613 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                         ATTGTTGTT GTATTCTACT CTCTCCTGTT ATAACCTGNC
  TATCACAGGC TGGCACACTC AGGAGTGCAC NGAGGACTTC ACGTTGTTTN TGAGATGTAC
  ATNTGTAGAC CCTTTGAGAc cacacgtggt agcacncgcc tacaattcct ccactcngca
  R
  gctgaggcag gatcctnnga gggaggatca ggaacccagt gttagcctgg gctgtggaat
  gcaaatacct actttaaaac aaCCAANGNA CAGGTGGGCG GAGGAACCTA AGNGCTNTAT
  TTTAAACTCT TTACTGGTTC ATATTACAGG TGATTTAAAT TCTTTAATGT GTCTGTGCAT
  GATTTATATG CTTTCAGTGC CTTGCATATT TTACTTAATA ATACTGTTGC TGTAACNCCA
  TGGTTTCTTG GTGAAGAGAA AAGTAATCTA CATTTCCTTT GGCTGCAGAA GAAAGGGATA
  CAAGNCAGAA GAACTTGGCT GCAAAGTCAT TGTGAGTCTN CTCTTTTGTC TCGGGGGGGG
  GGGGGGGGGA GTGCCTTGCT TCCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24743326	Gclm_AN8137_6	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16790802					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122037613 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13765	CpG island 13765	1253 bp proximal
Gclm	glutamate-cysteine ligase, modifier subunit	1593 bp upstream
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	154 bp downstream
Rr375675	regulatory region 375675	within coordinates
Rr397979	regulatory region 397979	1235 bp upstream
Rr584261	regulatory region 584261	850 bp distal
Rr584262	regulatory region 584262	112 bp distal
Rr584263	regulatory region 584263	745 bp distal
Rr584264	regulatory region 584264	within coordinates
Rr584265	regulatory region 584265	778 bp proximal
Rr584266	regulatory region 584266	1376 bp proximal
Rr584267	regulatory region 584267	1509 bp proximal
Tssr1039	transcription start site region 1039	1779 bp upstream
Tssr31477	transcription start site region 31477	835 bp downstream
Tssr31478	transcription start site region 31478	1512 bp upstream
Tssr31479	transcription start site region 31479	1599 bp upstream
Tssr31480	transcription start site region 31480	1617 bp upstream
Tssr31481	transcription start site region 31481	1646 bp upstream
Tssr31482	transcription start site region 31482	1661 bp upstream
Tssr31483	transcription start site region 31483	1812 bp upstream
Tssr31484	transcription start site region 31484	1946 bp upstream
Tssr35443	transcription start site region 35443	1255 bp downstream
Tssr35444	transcription start site region 35444	1338 bp downstream