rs16790799 SNP Detail

Summary

• ID
  rs16790799
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122037671 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GCTTATAATA AATGTTCAGT
  AAGTGAGAAC TACTATTTAT GGTGCTGGGG TCGAAGGCTT ACACATGCGT TCTGACAGTG
  GGCATCCCTA GCCCTCAAAA TTGTTGTTGT ATTCTACTCT CTCCTGTTAT AACCTGACTA
  TCACAGGCTG GCACACTCAG GAGTGCACGG AGGACTTCAC GTTGTTTCTG AGATGTACAT
  W
  TGTAGACCCT TTGAGACCAC ACGTGGTAGC ACGCGCCTAC AATTCCTCCA CTCGGCAGGC
  TGAGGCAGGA TCCTCGGAGG GAGGATCAGG AACCCAGTGT TAGCCTGGGC TGTGGAATGC
  AAATACCTAC TTTAAAACAA CCAACGGACA GGTGGGCGGA GGAACCTAAG CGCTGTATTT
  TAAACTCTTT ACTGGTTCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24743323	Gclm_AN8137_3	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16790799					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122037671 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13765	CpG island 13765	1195 bp proximal
Gclm	glutamate-cysteine ligase, modifier subunit	1535 bp upstream
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	212 bp downstream
Rr375675	regulatory region 375675	within coordinates
Rr397979	regulatory region 397979	1177 bp upstream
Rr584261	regulatory region 584261	908 bp distal
Rr584262	regulatory region 584262	170 bp distal
Rr584263	regulatory region 584263	803 bp distal
Rr584264	regulatory region 584264	within coordinates
Rr584265	regulatory region 584265	720 bp proximal
Rr584266	regulatory region 584266	1318 bp proximal
Rr584267	regulatory region 584267	1451 bp proximal
Tssr1039	transcription start site region 1039	1721 bp upstream
Tssr31477	transcription start site region 31477	893 bp downstream
Tssr31478	transcription start site region 31478	1454 bp upstream
Tssr31479	transcription start site region 31479	1541 bp upstream
Tssr31480	transcription start site region 31480	1559 bp upstream
Tssr31481	transcription start site region 31481	1588 bp upstream
Tssr31482	transcription start site region 31482	1603 bp upstream
Tssr31483	transcription start site region 31483	1754 bp upstream
Tssr31484	transcription start site region 31484	1888 bp upstream
Tssr35443	transcription start site region 35443	1197 bp downstream
Tssr35444	transcription start site region 35444	1280 bp downstream