rs16790798 SNP Detail

Summary

• ID
  rs16790798
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122037703 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CAGGC TGGCACACTC AGGAGTGCAC
  B
  GAGGACTTCA CGTTGTTTCT GAGAT                                      
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	SM/J	SPRET/EiJ	WSB/EiJ
ss24743322	Gclm_AN8137_2	ROCHEBIO	RPAMM	f	SNP	C			G	G	G	G	G	G		G	G	G	G	G	G			G	G	G	C	G		G	G		C	G	T
ss51021014	NES13905755	PERLEGEN	MM_PANEL2	r	SNP		G			C	C		C		C		C					C	C						C			C				C
ss135737748	ENSMUSSNP945539	ENSEMBL	ENSEMBL_Sanger	r	SNP			G		C										C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	SM/J	SPRET/EiJ	WSB/EiJ
rs16790798					SNP	C	C	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	C	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51021014	NES13905755	PERLEGEN	MM_PANEL	r	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122037703 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13765	CpG island 13765	1163 bp proximal
Gclm	glutamate-cysteine ligase, modifier subunit	1503 bp upstream
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	244 bp downstream
Rr375675	regulatory region 375675	within coordinates
Rr397979	regulatory region 397979	1145 bp upstream
Rr584261	regulatory region 584261	940 bp distal
Rr584262	regulatory region 584262	202 bp distal
Rr584263	regulatory region 584263	835 bp distal
Rr584264	regulatory region 584264	within coordinates
Rr584265	regulatory region 584265	688 bp proximal
Rr584266	regulatory region 584266	1286 bp proximal
Rr584267	regulatory region 584267	1419 bp proximal
Tssr1039	transcription start site region 1039	1689 bp upstream
Tssr31477	transcription start site region 31477	925 bp downstream
Tssr31478	transcription start site region 31478	1422 bp upstream
Tssr31479	transcription start site region 31479	1509 bp upstream
Tssr31480	transcription start site region 31480	1527 bp upstream
Tssr31481	transcription start site region 31481	1556 bp upstream
Tssr31482	transcription start site region 31482	1571 bp upstream
Tssr31483	transcription start site region 31483	1722 bp upstream
Tssr31484	transcription start site region 31484	1856 bp upstream
Tssr35443	transcription start site region 35443	1165 bp downstream
Tssr35444	transcription start site region 35444	1248 bp downstream