rs16790797 SNP Detail

Summary

• ID
  rs16790797
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122037735 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTCTA CTCTCTCCTG TTATAACCTG
  R
  CTATCACAGG CTGGCACACT CAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	PERA	SM/J	SPRET/EiJ
ss24743321	Gclm_AN8137_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	PERA	SM/J	SPRET/EiJ
rs16790797					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122037735 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13765	CpG island 13765	1131 bp proximal
Gclm	glutamate-cysteine ligase, modifier subunit	1471 bp upstream
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	276 bp downstream
Rr375675	regulatory region 375675	within coordinates
Rr397979	regulatory region 397979	1113 bp upstream
Rr584261	regulatory region 584261	972 bp distal
Rr584262	regulatory region 584262	234 bp distal
Rr584263	regulatory region 584263	867 bp distal
Rr584264	regulatory region 584264	within coordinates
Rr584265	regulatory region 584265	656 bp proximal
Rr584266	regulatory region 584266	1254 bp proximal
Rr584267	regulatory region 584267	1387 bp proximal
Tssr1039	transcription start site region 1039	1657 bp upstream
Tssr31477	transcription start site region 31477	957 bp downstream
Tssr31478	transcription start site region 31478	1390 bp upstream
Tssr31479	transcription start site region 31479	1477 bp upstream
Tssr31480	transcription start site region 31480	1495 bp upstream
Tssr31481	transcription start site region 31481	1524 bp upstream
Tssr31482	transcription start site region 31482	1539 bp upstream
Tssr31483	transcription start site region 31483	1690 bp upstream
Tssr31484	transcription start site region 31484	1824 bp upstream
Tssr35443	transcription start site region 35443	1133 bp downstream
Tssr35444	transcription start site region 35444	1216 bp downstream