rs16789913 SNP Detail

Summary

• ID
  rs16789913
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:174275321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGCCAGCA CTCTACCACT
  GAGCTAAATC CCCAGTCTGG AGTCCTCTGC AGCATTCCAA CCACATAGTG TGACAGATAT
  GGAGTAAATG TGAGCTCTCA GCCACTCTCC CTTGGAACGA GACAGGTGTG TAGCAATGTG
  GGAACATAGG CAGGGTCTAC CTTGGTCCTT GGCCTGGTAG TTGTTGCAGG TCTCATCGGG
  R
  ATGCCATGCT TGTGGGCATA CTCCCACACC GGAAGGTCAT TGCCCCCTTC ACAAGAGCCA
  GCATTGCCAC AGTCAATGAC ATTCTGTACG GACAGCAGGA TGGAGGGCCA TGCACCTTTC
  CTCTTGATGT TGATTCGGTC TGTAAGAGGC AGCACTCTGG TCAGCACCCA CGTTCCCCCA
  ACACCAAGAC TGCCCCAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	BUB	C57BL/6J	DBA/2J	FVB	LP/J	MOLF	PERA	SM/J	SPRET/EiJ
ss24742285	Ctsz_AN7936_6	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	BUB	C57BL/6J	DBA/2J	FVB	LP/J	MOLF	PERA	SM/J	SPRET/EiJ
rs16789913					SNP	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174275321 () rs orientation: forward

Symbol	Name	Function Class
Ctsz	cathepsin Z	Coding-Synonymous
Rr572121	regulatory region 572121	985 bp proximal
Tssr28023	transcription start site region 28023	1087 bp upstream
Tssr28024	transcription start site region 28024	20 bp downstream
Tssr28025	transcription start site region 28025	99 bp downstream