rs16789911 SNP Detail

Summary

• ID
  rs16789911
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:174275176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAAGCAG ATTTCTGAGT
  TCGAGGCCAG CCTGGTCTAC AGAGTGAGTT CCAGGACAGC CAGGGCTATA CAGAGAAACC
  CTGTGTAGAA AGACAAAAAA AAAAAAAAAA ATTGAGATTG AGCCTAGGGC CTCATGTAAA
  GTAAGTAGGC CAGCACTCTA CCACTGAGCT AAATCCCCAG TCTGGAGTCC TCTGCAGCAT
  Y
  CCAACCACAT AGTGTGACAG ATATGGAGTA AATGTGAGCT CTCAGCCACT CTCCCTTGGA
  ACGAGACAGG TGTGTAGCAA TGTGGGAACA TAGGCAGGGT CTACCTTGGT CCTTGGCCTG
  GTAGTTGTTG CAGGTCTCAT CGGGGATGCC ATGCTTGTGG GCATACTCCC ACACCGGAAG
  GTCATTGCCC CCTTCACAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF	MOLF/EiJ	MSM	MSM/Ms	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss24742283	Ctsz_AN7936_4	ROCHEBIO	RPAMM	f	SNP			C	C	T	T		C	T	T	T	T				C	C		C			T		T		T	C
ss37829765	NES08709690	PERLEGEN	MM_PANEL2	f	SNP	C				T	T	T		T		T		T	T				C			C		C		C			C
ss45365321	mCV23192350	ABI	CRAMUS_MOUSE	f	SNP		C		C						T	T
ss148343406	ENSMUSSNP5717250	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C							T									C
ss320627803	CHEV_2_174258884	CHEVERUD	SCREENING_POP	f	SNP															C											T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	DBA/2J	FVB	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF	MOLF/EiJ	MSM	MSM/Ms	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs16789911					SNP	C	C	C	C	T	T	T	C	T	T	T	T	T	T	C	C	C	C	C	C	C	T	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37829765	NES08709690	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174275176 () rs orientation: forward

Symbol	Name	Function Class
Ctsz	cathepsin Z	Intron
Rr572121	regulatory region 572121	1130 bp proximal
Tssr28023	transcription start site region 28023	942 bp upstream
Tssr28024	transcription start site region 28024	165 bp downstream
Tssr28025	transcription start site region 28025	244 bp downstream