rs16789910 SNP Detail

Summary

• ID
  rs16789910
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:174275163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGA GCTAAATCCC CAGTCTGGAG
  Y
  CCTCTGCAGC ATTCCAACCA CATAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	DBA/2J	FVB	FVB/NJ	KK/HlJ	LP/J	MOLF	MOLF/EiJ	MSM	MSM/Ms	NZB/BlNJ	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss24742282	Ctsz_AN7936_3	ROCHEBIO	RPAMM	f	SNP			T	T	T	T		C		T	T	T			T	C		C		T		T		T	T
ss37829766	NES08709689	PERLEGEN	MM_PANEL2	f	SNP	T			T	T	T	T		T		T		T	T			C				T		C			T
ss148343402	ENSMUSSNP5433005	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T							T								C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB	C3H/HeJ	C57BL/6J	DBA/2J	FVB	FVB/NJ	KK/HlJ	LP/J	MOLF	MOLF/EiJ	MSM	MSM/Ms	NZB/BlNJ	NZW/LacJ	PERA	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs16789910					SNP	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	C	C	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37829766	NES08709689	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174275163 () rs orientation: forward

Symbol	Name	Function Class
Ctsz	cathepsin Z	Intron
Rr572121	regulatory region 572121	1143 bp proximal
Tssr28023	transcription start site region 28023	929 bp upstream
Tssr28024	transcription start site region 28024	178 bp downstream
Tssr28025	transcription start site region 28025	257 bp downstream