rs16789909 SNP Detail

Summary

• ID
  rs16789909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:174275148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTTAATC CCAGCACTTG
  GGAGGCAGAG GCAAGCAGAT TTCTGAGTTC GAGGCCAGCC TGGTCTACAG AGTGAGTTCC
  AGGACAGCCA GGGCTATACA GAGAAACCCT GTGTAGAAAG ACAAAAAAAA AAAAAAAAAT
  TGAGATTGAG CCTAGGGCCT CATGTAAAGT AAGTAGGCCA GCACTCTACC ACTGAGCTAA
  R
  TCCCCAGTCT GGAGTCCTCT GCAGCATTCC AACCACATAG TGTGACAGAT ATGGAGTAAA
  TGTGAGCTCT CAGCCACTCT CCCTTGGAAC GAGACAGGTG TGTAGCAATG TGGGAACATA
  GGCAGGGTCT ACCTTGGTCC TTGGCCTGGT AGTTGTTGCA GGTCTCATCG GGGATGCCAT
  GCTTGTGGGC ATACTCCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BUB	C57BL/6J	DBA/2J	FVB	LG/J	LP/J	MOLF	MSM/Ms	NZB/BlNJ	PERA	SM/J	SPRET/EiJ
ss24742281	Ctsz_AN7936_2	ROCHEBIO	RPAMM	f	SNP		G	G	A	A	G	A	A	A		G	G		A	A	A	A
ss45347501	mCV23192349	ABI	CRAMUS_MOUSE	f	SNP	G		G				A	A
ss148343396	ENSMUSSNP3879829	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G					A					G
ss320627802	CHEV_2_174258856	CHEVERUD	SCREENING_POP	f	SNP										G						A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BUB	C57BL/6J	DBA/2J	FVB	LG/J	LP/J	MOLF	MSM/Ms	NZB/BlNJ	PERA	SM/J	SPRET/EiJ
rs16789909					SNP	G	G	G	A	A	G	A	A	A	G	G	G	G	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174275148 () rs orientation: forward

Symbol	Name	Function Class
Ctsz	cathepsin Z	Intron
Rr572121	regulatory region 572121	1158 bp proximal
Tssr28023	transcription start site region 28023	914 bp upstream
Tssr28024	transcription start site region 28024	193 bp downstream
Tssr28025	transcription start site region 28025	272 bp downstream