rs16789908 SNP Detail

Summary

• ID
  rs16789908
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:174275115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTGAGAT TGGGTGGGGC
  AGTGGCGGTG CACACCTTTA ATCCCAGCAC TTGGGAGGCA GAGGCAAGCA GATTTCTGAG
  TTCGAGGCCA GCCTGGTCTA CAGAGTGAGT TCCAGGACAG CCAGGGCTAT ACAGAGAAAC
  CCTGTGTAGA AAGACAAAAA AAAAAAAAAA AATTGAGATT GAGCCTAGGG CCTCATGTAA
  R
  GTAAGTAGGC CAGCACTCTA CCACTGAGCT AAATCCCCAG TCTGGAGTCC TCTGCAGCAT
  TCCAACCACA TAGTGTGACA GATATGGAGT AAATGTGAGC TCTCAGCCAC TCTCCCTTGG
  AACGAGACAG GTGTGTAGCA ATGTGGGAAC ATAGGCAGGG TCTACCTTGG TCCTTGGCCT
  GGTAGTTGTT GCAGGTCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BUB	C57BL/6J	DBA/2J	FVB	LG/J	LP/J	MOLF	MSM/Ms	NZB/BlNJ	PERA	SM/J	SPRET/EiJ
ss24742280	Ctsz_AN7936_1	ROCHEBIO	RPAMM	f	SNP		G		A	A	G	A	A	A		G	G		A	A	A	G
ss45257331	mCV23192348	ABI	CRAMUS_MOUSE	f	SNP	G		G				A	A
ss148343392	ENSMUSSNP4404003	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G					A					G
ss320627801	CHEV_2_174258823	CHEVERUD	SCREENING_POP	f	SNP										G						A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BUB	C57BL/6J	DBA/2J	FVB	LG/J	LP/J	MOLF	MSM/Ms	NZB/BlNJ	PERA	SM/J	SPRET/EiJ
rs16789908					SNP	G	G	G	A	A	G	A	A	A	G	G	G	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174275115 () rs orientation: forward

Symbol	Name	Function Class
Ctsz	cathepsin Z	Intron
Rr572121	regulatory region 572121	1191 bp proximal
Tssr28023	transcription start site region 28023	881 bp upstream
Tssr28024	transcription start site region 28024	226 bp downstream
Tssr28025	transcription start site region 28025	305 bp downstream