rs16784878 SNP Detail

Summary

• ID
  rs16784878
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119335857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATATTGT GATATTTCCT
  CAAATAAACA ACACTGCTCA AAATATAGGT GCGCACCCAT CTTATCGCTG CCCTTCAACC
  CTGTGCTTCC TCCTAACTGA GCACCAGGTC AGAAGCCTAA GGACAAGCAG GACAGTTACT
  GTGTCTCTGC ACTGAAAAGC ACAGCCTCTG ATTCTAATGG TGCACCTTGA ATGACCGGTG
  R
  TAACTGCACA CTCACATGCA CTCACCTGCT CTGACCCCCC GATACTGAGG GGTGGCAAAC
  ATGTCCCACT GAGAGACGAT AATGGCTGCA ATGCCCAGCA CACAGATGAC AATCAGGTAG
  ATGAAGCAAG GTTGTGGGTT ACAGTAGAAA GAATAATAAA GCCAAGGAAC AAAACTTCCC
  ATGATCAGAA GAGCAATACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss24736469	Adipor2_JC8823_8	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs16784878					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119335857 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adipor2	adiponectin receptor 2			Intron
				Noncoding-Transcript-Variant
Rr637644	regulatory region 637644			1747 bp proximal
Tssr62709	transcription start site region 62709			591 bp downstream