rs16782996 SNP Detail

Summary

• ID
  rs16782996
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122038426 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AAAGA AACATGAATC TGAGTTGGTA
  R
  ACTACTAAGA AATAGGAAAG GCTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24743336	Gclm_AN8138_1	ROCHEBIO	RPAMM	f	SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A		A	A	A	A
ss24743348	Gclm_AN8139_3	ROCHEBIO	RPAMM	f	SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16782996					SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122038426 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi13765	CpG island 13765	440 bp proximal
Gclm	glutamate-cysteine ligase, modifier subunit	780 bp upstream
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	967 bp downstream
Rr375675	regulatory region 375675	300 bp downstream
Rr397979	regulatory region 397979	422 bp upstream
Rr584261	regulatory region 584261	1663 bp distal
Rr584262	regulatory region 584262	925 bp distal
Rr584263	regulatory region 584263	1558 bp distal
Rr584264	regulatory region 584264	508 bp distal
Rr584265	regulatory region 584265	within coordinates
Rr584266	regulatory region 584266	563 bp proximal
Rr584267	regulatory region 584267	696 bp proximal
Rr584268	regulatory region 584268	1445 bp proximal
Tssr1039	transcription start site region 1039	966 bp upstream
Tssr31477	transcription start site region 31477	1648 bp downstream
Tssr31478	transcription start site region 31478	699 bp upstream
Tssr31479	transcription start site region 31479	786 bp upstream
Tssr31480	transcription start site region 31480	804 bp upstream
Tssr31481	transcription start site region 31481	833 bp upstream
Tssr31482	transcription start site region 31482	848 bp upstream
Tssr31483	transcription start site region 31483	999 bp upstream
Tssr31484	transcription start site region 31484	1133 bp upstream
Tssr35443	transcription start site region 35443	442 bp downstream
Tssr35444	transcription start site region 35444	525 bp downstream