rs13466504 SNP Detail

Summary

• ID
  rs13466504
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172393383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCGC ATCCCTCACC TCTCCTCTCC
  S
  GGACAACATC TCTACAGTCC CGCGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45329120	mCV23507381	ABI	CRAMUS_MOUSE	f	SNP	C	C	G
ss148318948	ENSMUSSNP3965598	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320619391	CHEV_2_172376963	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs13466504					SNP	C	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172393383 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12825	CpG island 12825			within coordinates
Rr571697	regulatory region 571697			1860 bp distal
Rr571698	regulatory region 571698			462 bp distal
Rr571699	regulatory region 571699			834 bp distal
Tfap2c	transcription factor AP-2, gamma			Coding-Synonymous
				Noncoding-Transcript-Variant
Tssr21966	transcription start site region 21966			1858 bp downstream
Tssr21967	transcription start site region 21967			1814 bp downstream
Tssr21968	transcription start site region 21968			696 bp downstream
Tssr21969	transcription start site region 21969			420 bp downstream
Tssr21970	transcription start site region 21970			40 bp upstream
Tssr21971	transcription start site region 21971			59 bp upstream
Tssr27948	transcription start site region 27948			523 bp upstream