rs13459392 SNP Detail

Summary

• ID
  rs13459392
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:48691314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GCGGCGACCC TCGCATCAAC TGCAGCCATG ACCGAGCAGA TGACCCTTCG
  Y
  GGGACCCTTA AGGGCCACAA TGGATGGGTA ACACAGATCG CCACCACACC           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37219199	NES08451758	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13459392					SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219199	NES08451758	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48691314 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm25296	predicted gene, 25296			379 bp upstream
Gm36109	predicted gene, 36109			1084 bp upstream
Rack1	receptor for activated C kinase 1			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr446113	regulatory region 446113			117 bp distal
Rr446114	regulatory region 446114			within coordinates
Snord96a	small nucleolar RNA, C/D box 96A			1546 bp upstream
Tssr101138	transcription start site region 101138			416 bp downstream
Tssr101139	transcription start site region 101139			118 bp downstream
Tssr101140	transcription start site region 101140			94 bp downstream
Tssr101141	transcription start site region 101141			377 bp upstream
Tssr101142	transcription start site region 101142			1312 bp upstream
Tssr101143	transcription start site region 101143			1779 bp upstream
Tssr101144	transcription start site region 101144			1822 bp upstream
Tssr107634	transcription start site region 107634			1082 bp upstream
Tssr107635	transcription start site region 107635			482 bp upstream