rs108923713 SNP Detail

Summary

• ID
  rs108923713
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113392912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGTGACC AGAGTCCCTT
  GGCCCCAGTA AGCAAACCAG GCACATTGTG ACAACAATGA TTAGACCCCT GACAATAAAT
  GATCCTTGGC TAGGGCTCCA GGATGATCTC AGATGGAGGC CAGTGAGGGA CAAAGAAAGC
  ATAGAAGAGA GGGACCTAGC GGCAATGCTG GCCAGGATCC CTATAAATCT CTGGCCATGA
  R
  GTATGGGAGC TGAGGATGTC TGTCTGCGTC AGCCAGGGCT CCCAATGACC CTTTCTGACT
  CCCAAGGTGT CCCTAGTCCT TCATGACCTG AAATTCAGAT ACACACATTT CCCCCCCAAC
  AAATGCAGTA AAATCTATTT AAGCTGAATA GAAGAGAGAG GTTGTAAGGA CTCACCTGAG
  GAGACTGTGA GAGTGGTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss138742367	ENSMUSSNP6060967	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108923713					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113392912 () rs orientation: forward

Symbol	Name	Function Class
Gm56536	predicted gene, 56536	1925 bp upstream
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	1236 bp downstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	489 bp downstream
Ighj2	immunoglobulin heavy joining 2	176 bp downstream
Ighj3	immunoglobulin heavy joining 3	160 bp upstream
Ighj4	immunoglobulin heavy joining 4	725 bp upstream
Rr148	regulatory region 148	1654 bp distal
Rr149	regulatory region 149	1706 bp distal
Rr150	regulatory region 150	1563 bp distal
Rr554	regulatory region 554	1320 bp distal
Rr555	regulatory region 555	1886 bp distal
Rr403536	regulatory region 403536	1634 bp downstream
Rr473804	regulatory region 473804	1435 bp distal
Tssr3971	transcription start site region 3971	1819 bp upstream
Tssr3972	transcription start site region 3972	1779 bp upstream
Tssr3973	transcription start site region 3973	1761 bp upstream
Tssr115504	transcription start site region 115504	935 bp upstream
Tssr118001	transcription start site region 118001	1998 bp upstream
Tssr118002	transcription start site region 118002	1962 bp upstream
Tssr118003	transcription start site region 118003	1896 bp upstream
Tssr118004	transcription start site region 118004	1870 bp upstream
Tssr118005	transcription start site region 118005	745 bp upstream
Tssr118006	transcription start site region 118006	714 bp upstream
Tssr118007	transcription start site region 118007	668 bp upstream
Tssr118008	transcription start site region 118008	641 bp upstream
Tssr118009	transcription start site region 118009	630 bp upstream
Tssr118010	transcription start site region 118010	492 bp upstream
Tssr118011	transcription start site region 118011	394 bp upstream
Tssr118012	transcription start site region 118012	159 bp upstream
Tssr118013	transcription start site region 118013	144 bp upstream
Tssr118014	transcription start site region 118014	40 bp upstream
Tssr118015	transcription start site region 118015	16 bp downstream
Tssr118016	transcription start site region 118016	198 bp downstream
Tssr118017	transcription start site region 118017	528 bp downstream
Tssr118018	transcription start site region 118018	1084 bp downstream
Tssr118019	transcription start site region 118019	1101 bp downstream
Tssr118020	transcription start site region 118020	1157 bp downstream
Tssr118021	transcription start site region 118021	1297 bp downstream
Tssr118022	transcription start site region 118022	1329 bp downstream
Tssr118023	transcription start site region 118023	1494 bp downstream