rs108905838 SNP Detail

Summary

• ID
  rs108905838
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:71159929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGGTTTG CAGAGTGCTC
  CCTAAGTGAG CACACGCGGG CATCAGCGCA GGAGGCGGTT GCACGACAGT GTCCAGGGAG
  AACCCAACGG CTGGCAAGCC CCCTCTGCAA ACCGCCCTGG CGCAGCGCTT TCCGGGACCC
  GGCAGGGGAT GACTCAGCTG CTGCGCCCCG GTGCGGGACT CATGTGGTGC GGGAGGGGGC
  Y
  ACGGAGGGCC CAGCCGCCGG TTGAGGGCCG CCTCGCTCTG GGTTTTTGGT GTTTGTGGCT
  GGGATTGGTG GCTCACATCC GCCGGGGACT CGGGAGAGGA GGGAGAACAG ACTCGGGGAG
  GAGGAGCTGG ACCGAGTGAG TGGCAGGAGC CGGGTCCGGA CCCGGCGGTG ACTGCCTTGT
  CATTTTGTTT GCTAACTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398923332	MGP_WTSI_17_71202274	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108905838					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398923332	MGP_WTSI_17_71202274	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:71159929 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm36856	predicted gene, 36856			638 bp upstream
Gm56903	predicted gene, 56903			within coordinates
Gm56904	predicted gene, 56904			within coordinates
Rr405418	regulatory region 405418			381 bp downstream
Rr530336	regulatory region 530336			1876 bp distal
Rr530337	regulatory region 530337			1822 bp distal
Rr530338	regulatory region 530338			1237 bp distal
Rr530339	regulatory region 530339			710 bp distal
Rr530340	regulatory region 530340			167 bp distal
Rr530341	regulatory region 530341			within coordinates
Rr530342	regulatory region 530342			213 bp proximal
Rr530343	regulatory region 530343			844 bp proximal
Tgif1	TGFB-induced factor homeobox 1			Intron
				mRNA-UTR
Tssr145687	transcription start site region 145687			1570 bp downstream
Tssr145688	transcription start site region 145688			911 bp downstream
Tssr145689	transcription start site region 145689			503 bp downstream
Tssr145690	transcription start site region 145690			192 bp downstream
Tssr145691	transcription start site region 145691			164 bp downstream
Tssr145692	transcription start site region 145692			128 bp downstream
Tssr145693	transcription start site region 145693			66 bp upstream
Tssr145694	transcription start site region 145694			166 bp upstream
Tssr145695	transcription start site region 145695			809 bp upstream
Tssr149222	transcription start site region 149222			1866 bp upstream
Tssr149223	transcription start site region 149223			1847 bp upstream
Tssr149224	transcription start site region 149224			1816 bp upstream
Tssr149225	transcription start site region 149225			1718 bp upstream
Tssr149226	transcription start site region 149226			1702 bp upstream
Tssr149227	transcription start site region 149227			1291 bp upstream
Tssr149228	transcription start site region 149228			1196 bp upstream
Tssr149229	transcription start site region 149229			1160 bp upstream
Tssr149230	transcription start site region 149230			1041 bp upstream
Tssr149231	transcription start site region 149231			673 bp upstream
Tssr149232	transcription start site region 149232			650 bp upstream
Tssr149233	transcription start site region 149233			126 bp upstream
Tssr149234	transcription start site region 149234			241 bp downstream
Tssr149235	transcription start site region 149235			538 bp downstream
Tssr149236	transcription start site region 149236			548 bp downstream
Tssr149237	transcription start site region 149237			617 bp downstream
Tssr149238	transcription start site region 149238			708 bp downstream