rs108851460 SNP Detail

Summary

• ID
  rs108851460
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148086501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAA GCAGTTGGAA AAAAAAAAAA
  W
  GAATAAACTT CAGCACCAAG GACAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147989422	ENSMUSSNP6204844	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss321416338	CHEV_4_147376153	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108851460					SNP	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148086501 () rs orientation: forward

Symbol	Name	Function Class
Gm13054	predicted gene 13054	within coordinates
Nppa	natriuretic peptide type A	mRNA-UTR
Rr407043	regulatory region 407043	484 bp distal
Rr604546	regulatory region 604546	1312 bp distal
Rr604547	regulatory region 604547	323 bp distal
Tssr40239	transcription start site region 40239	1403 bp downstream
Tssr40240	transcription start site region 40240	1290 bp downstream
Tssr40241	transcription start site region 40241	933 bp downstream
Tssr40242	transcription start site region 40242	706 bp downstream
Tssr40243	transcription start site region 40243	240 bp downstream
Tssr40244	transcription start site region 40244	37 bp downstream
Tssr44568	transcription start site region 44568	19 bp downstream