rs108732278 SNP Detail

Summary

• ID
  rs108732278
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:61214839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGTG ACCCCTGGAG AGAGGCGGGG
  T
  GGGGTCAGAG GGCCAGCGAT GACGT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss146621715	ENSMUSSNP2191195	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325886310	CHEV_19_61302304	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs108732278					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:61214839 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11146	CpG island 11146			within coordinates
Csf2ra	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)			Intron
				Noncoding-Transcript-Variant
Gm56644	predicted gene, 56644			within coordinates
Rr406075	regulatory region 406075			1820 bp downstream
Rr406076	regulatory region 406076			74 bp downstream
Rr406077	regulatory region 406077			825 bp upstream
Rr550840	regulatory region 550840			437 bp proximal
Rr550841	regulatory region 550841			965 bp proximal
Tssr157374	transcription start site region 157374			1961 bp downstream
Tssr157375	transcription start site region 157375			1918 bp downstream
Tssr157376	transcription start site region 157376			1856 bp downstream
Tssr157377	transcription start site region 157377			1791 bp downstream
Tssr157378	transcription start site region 157378			1717 bp downstream
Tssr157379	transcription start site region 157379			1639 bp downstream
Tssr157380	transcription start site region 157380			1091 bp upstream
Tssr157381	transcription start site region 157381			1356 bp upstream
Tssr160090	transcription start site region 160090			1795 bp upstream
Tssr160091	transcription start site region 160091			1771 bp upstream
Tssr160092	transcription start site region 160092			1647 bp upstream
Tssr160093	transcription start site region 160093			1552 bp upstream
Tssr160094	transcription start site region 160094			1490 bp upstream
Tssr160095	transcription start site region 160095			1403 bp upstream
Tssr160096	transcription start site region 160096			955 bp upstream
Tssr160097	transcription start site region 160097			759 bp upstream
Tssr160098	transcription start site region 160098			299 bp upstream
Tssr160099	transcription start site region 160099			96 bp upstream
Tssr160100	transcription start site region 160100			20 bp upstream
Tssr160101	transcription start site region 160101			249 bp downstream
Tssr160102	transcription start site region 160102			792 bp downstream
Tssr160103	transcription start site region 160103			904 bp downstream
Tssr160104	transcription start site region 160104			1985 bp downstream
Tssr160105	transcription start site region 160105			1995 bp downstream