rs108659540 SNP Detail

Summary

• ID
  rs108659540
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:28398007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTAGTAA TGATCCCCCT
  GCCCCAGAAA CTACTGTATG GCAAACTTTA TTTATATAGA TTAACTAGAC CTCTCACAGG
  CCAGACCTAT TAGCTCTTTC TGTCACCACT CCCTCCCTGC CTTTTCCTGA GAGTTGCTTT
  AAATAAAGGA ATCTGGAATT GATACATTTG AACTGACCAT GCTAGAAAAC CCACCCACTC
  S
  GTTGTCTCTC ATATCCTGAC TTCCTGGTTT TCCAAATTCT CCTCAGGCCC TTGCTCCTTG
  CTTTCCAGGA ATTCTTAAAT TCAACCTTCG CCCATCTAAT CACCCTCAAG GGCTTCTTCT
  CCTTGTCCCA TGACTAAGTA ACTTTTCTCA CCCTCTTCAT GACCCTTGAC CTCTTATCCC
  CCCAAGACCC CTTGCACCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325352126	CHEV_17_28315978	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108659540					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28398007 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
C230013L11Rik	RIKEN cDNA C230013L11 gene			1351 bp upstream
Rr524454	regulatory region 524454			1565 bp distal
Rr524455	regulatory region 524455			1838 bp distal
Rr524456	regulatory region 524456			1362 bp distal
Rr524457	regulatory region 524457			905 bp distal
Rr524458	regulatory region 524458			1335 bp proximal
Tssr143392	transcription start site region 143392			1819 bp downstream
Tssr143393	transcription start site region 143393			1584 bp downstream
Tssr147097	transcription start site region 147097			1351 bp upstream
Zfp523	zinc finger protein 523			Intron
				Noncoding-Transcript-Variant