rs108653635 SNP Detail

Summary

• ID
  rs108653635
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146194083 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGGTTCT CAACTCTGCC
  CTCCCCACTT TTTGACACAG TTAACATAAC AAAATATAAT TGTTCATTCT TTCTTGGTTG
  CCGAATTTTC TATTCCTCTG ATCATTTTCT CTGCTCAGAA ATCTCTTCTG ACCCTTCATT
  CTTTTCAAGA TCAAATATTA TCTTTTATGA TTCAAGCTTG AGTAACATTT CTTCCTCAAC
  R
  TCCCCTACCT ACCTTCTTCT GCTGCTAAAA AAATCTTACT TTCTTCATTA TATAAAATAT
  GATGTTCAAT TTATTCATAT TATATAATTT ACCTTCACAA CCACACCAAA AACACTTTAA
  GGACAAATTG CATATTTATC TCTATATGCA GTAAAATGTT AATAAATATT TTTTGAAAAT
  AAAATATTAC AAACATTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss136044765	ENSMUSSNP2479501	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs108653635					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146194083 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587033	regulatory region 587033			1569 bp distal
Rr587034	regulatory region 587034			1719 bp distal
Rr587035	regulatory region 587035			1658 bp distal
Spata1	spermatogenesis associated 1			Intron
				Noncoding-Transcript-Variant