rs108626602 SNP Detail

Summary

• ID
  rs108626602
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:155500628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G ATTTGGCATC CCTTCAGGCT ACAGACTTGA CTCCCTGACC
  TGACCCTCCC TGACCCTCCC TGACCCTGAC CCTCCCTGAC CCTCCCTGAC CCTGACCCTC
  T
  CTGACCCTCC CTGACCCTGA CCCTCTCTGA CCCTCCCTGA CCCTGACCCT CCCTGACCCT
  CCCTGACCCT GACCCTCTCT GACCCTCCCT GACCCTGACC C                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148113235	ENSMUSSNP543360	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs108626602					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155500628 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
5830444B04Rik	RIKEN cDNA 5830444B04 gene			within coordinates
Cfap74	cilia and flagella associated protein 74			Intron
				Noncoding-Transcript-Variant
Rr606475	regulatory region 606475			within coordinates
Rr606476	regulatory region 606476			935 bp proximal
Tssr40639	transcription start site region 40639			1220 bp downstream
Tssr40640	transcription start site region 40640			1185 bp downstream
Tssr40641	transcription start site region 40641			1153 bp downstream
Tssr44947	transcription start site region 44947			1393 bp upstream
Tssr44948	transcription start site region 44948			1367 bp upstream
Tssr44949	transcription start site region 44949			1287 bp upstream