rs108579163 SNP Detail

Summary

• ID
  rs108579163
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:71158138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGGAGTGG CGGGAGGGTA
  GTCGATGATC CTCCTCCTAT ACTAGTGCTC CGGTAACTTA CAAGAGAGTG TTCCAACCAC
  TATTGCTAAA CAAGGTGCTC CGGTCTCAGG CGCTGGCTTC TGGGTTGGAA TTCAAGTGAC
  ACTTGGGCTT CCTCCAGTCG GGATCTTCTG GCAGCCAGCC GGGGGTTCTC CCTGGCCCAA
  Y
  TCCCTCCCTC CCTACTCAGC TCCTTTGTTT CCCGCTCCAC TCGGCGCACC TCGGCGCTGT
  CAGAGTGAGA GAGCAGAGGG AAGGTACAGG AGGTCCTGCC TCCGCCCCCA ACCGCCCGCC
  CCGTCCCCCG CCCGCCCCGC CGCGCTCCTC TGCCCCTCCC CCGCACCTTC CAGCTCCACA
  ACCCTGGGCC TGGGGGCCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398923309	MGP_WTSI_17_71200483	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108579163					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398923309	MGP_WTSI_17_71200483	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:71158138 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm56903	predicted gene, 56903			964 bp downstream
Gm56904	predicted gene, 56904			within coordinates
Rr405418	regulatory region 405418			1109 bp upstream
Rr530335	regulatory region 530335			466 bp distal
Rr530336	regulatory region 530336			85 bp distal
Rr530337	regulatory region 530337			31 bp distal
Rr530338	regulatory region 530338			54 bp proximal
Rr530339	regulatory region 530339			581 bp proximal
Rr530340	regulatory region 530340			1124 bp proximal
Rr530341	regulatory region 530341			1625 bp proximal
Tgif1	TGFB-induced factor homeobox 1			Intron
				mRNA-UTR
Tssr145684	transcription start site region 145684			1674 bp downstream
Tssr145685	transcription start site region 145685			956 bp downstream
Tssr145686	transcription start site region 145686			423 bp downstream
Tssr145687	transcription start site region 145687			193 bp upstream
Tssr145688	transcription start site region 145688			872 bp upstream
Tssr145689	transcription start site region 145689			1262 bp upstream
Tssr145690	transcription start site region 145690			1588 bp upstream
Tssr145691	transcription start site region 145691			1608 bp upstream
Tssr145692	transcription start site region 145692			1652 bp upstream
Tssr145693	transcription start site region 145693			1857 bp upstream
Tssr145694	transcription start site region 145694			1957 bp upstream
Tssr149219	transcription start site region 149219			1851 bp upstream
Tssr149220	transcription start site region 149220			1318 bp upstream
Tssr149221	transcription start site region 149221			785 bp upstream
Tssr149222	transcription start site region 149222			75 bp upstream
Tssr149223	transcription start site region 149223			56 bp upstream
Tssr149224	transcription start site region 149224			25 bp upstream
Tssr149225	transcription start site region 149225			46 bp downstream
Tssr149226	transcription start site region 149226			75 bp downstream
Tssr149227	transcription start site region 149227			484 bp downstream
Tssr149228	transcription start site region 149228			567 bp downstream
Tssr149229	transcription start site region 149229			613 bp downstream
Tssr149230	transcription start site region 149230			743 bp downstream
Tssr149231	transcription start site region 149231			1089 bp downstream
Tssr149232	transcription start site region 149232			1132 bp downstream
Tssr149233	transcription start site region 149233			1652 bp downstream