rs108557190 SNP Detail

Summary

• ID
  rs108557190
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:71157647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCGCCAAG GACCCCCCAC
  AGGGAAAAGC GAGGTGCCAG GGTCTCCTAG AACATCAACC GCAAAGCCCT GCCCCAGAAA
  CGGCACTAGA AACCACGCGG CGCCTGGGCC GAGCATGGGG TGTCAGGAAG ACAATGAAAC
  TTGGAGGCGT ACAAACAAGG CGCTGAGCGT GGTTCTTGAC AACGTGCCAA CAGCGTGGCG
  Y
  GGCTCAGCCT CCCCACAACA GCCCCTCGGG TTGTGTCTAG AAGGAAAAGA ACACCAACTG
  CCATCAGAGA CACAGCCTCA ACAAAGAGAA CAGCCACCAA TCCAGCCGGG GAGCCACTGG
  TCCGAAAAGT CCCATCAAGT CAGTGTTCTC CCGATCCGGC GCGGCCCGCA CATGTCCCGC
  ACTGGTGCCC CGGGCGCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398923306	MGP_WTSI_17_71199992	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108557190					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398923306	MGP_WTSI_17_71199992	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:71157647 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm56903	predicted gene, 56903			1455 bp downstream
Gm56904	predicted gene, 56904			within coordinates
Rr405418	regulatory region 405418			1600 bp upstream
Rr530334	regulatory region 530334			1843 bp distal
Rr530335	regulatory region 530335			within coordinates
Rr530336	regulatory region 530336			26 bp proximal
Rr530337	regulatory region 530337			407 bp proximal
Rr530338	regulatory region 530338			545 bp proximal
Rr530339	regulatory region 530339			1072 bp proximal
Rr530340	regulatory region 530340			1615 bp proximal
Tgif1	TGFB-induced factor homeobox 1			Intron
				Noncoding-Transcript-Variant
Tssr145684	transcription start site region 145684			1183 bp downstream
Tssr145685	transcription start site region 145685			465 bp downstream
Tssr145686	transcription start site region 145686			43 bp upstream
Tssr145687	transcription start site region 145687			684 bp upstream
Tssr145688	transcription start site region 145688			1363 bp upstream
Tssr145689	transcription start site region 145689			1753 bp upstream
Tssr149219	transcription start site region 149219			1360 bp upstream
Tssr149220	transcription start site region 149220			827 bp upstream
Tssr149221	transcription start site region 149221			294 bp upstream
Tssr149222	transcription start site region 149222			405 bp downstream
Tssr149223	transcription start site region 149223			423 bp downstream
Tssr149224	transcription start site region 149224			457 bp downstream
Tssr149225	transcription start site region 149225			537 bp downstream
Tssr149226	transcription start site region 149226			566 bp downstream
Tssr149227	transcription start site region 149227			975 bp downstream
Tssr149228	transcription start site region 149228			1058 bp downstream
Tssr149229	transcription start site region 149229			1104 bp downstream
Tssr149230	transcription start site region 149230			1234 bp downstream
Tssr149231	transcription start site region 149231			1580 bp downstream
Tssr149232	transcription start site region 149232			1623 bp downstream