rs108541101 SNP Detail

Summary

• ID
  rs108541101
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:71159162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCCCACC CCCACGCGCC
  TTTTTAAAAA GATGGGGGAC TACGCCGGGA CTGCTCATCT GTTTCAGTAA ACAGTGTCTA
  CTTTGTGTGC TAATATCCCA CCAGAGGACA CCCTTCAGTA TTTCAAACAG AAACTAGCCA
  TTAAATAAAC ACTCATTCCT ATTGGTTTAT TTTGCTTGAG AGGGGAGCTC CAAAGAGTTG
  M
  ACGAAGAATC GAGAATCGTC CCCTCCCCAA ATACAAGCCA GATGCTGTTA TGGCTGACTT
  CGAGACGCGC ACGCCCGCAC TTCTGGGTCT AGTTTTCACC TATGCCCGGT TGTTTAAAAA
  AAAAAAAAAA AAAAAAAAAA AAAAAAGCAA AGAAAAGCAA CTGTCACATG TCACAGAAGA
  CTTTCCCCAT AGAGGGGGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss131103416	NCBIM37_NT_039649_chr17_71201507	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108541101					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss131103416	NCBIM37_NT_039649_chr17_71201507	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:71159162 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm36856	predicted gene, 36856			1405 bp upstream
Gm56903	predicted gene, 56903			within coordinates
Gm56904	predicted gene, 56904			within coordinates
Rr405418	regulatory region 405418			85 bp upstream
Rr530335	regulatory region 530335			1490 bp distal
Rr530336	regulatory region 530336			1109 bp distal
Rr530337	regulatory region 530337			1055 bp distal
Rr530338	regulatory region 530338			470 bp distal
Rr530339	regulatory region 530339			within coordinates
Rr530340	regulatory region 530340			100 bp proximal
Rr530341	regulatory region 530341			601 bp proximal
Rr530342	regulatory region 530342			980 bp proximal
Rr530343	regulatory region 530343			1611 bp proximal
Tgif1	TGFB-induced factor homeobox 1			Intron
				mRNA-UTR
Tssr145685	transcription start site region 145685			1980 bp downstream
Tssr145686	transcription start site region 145686			1447 bp downstream
Tssr145687	transcription start site region 145687			803 bp downstream
Tssr145688	transcription start site region 145688			144 bp downstream
Tssr145689	transcription start site region 145689			238 bp upstream
Tssr145690	transcription start site region 145690			564 bp upstream
Tssr145691	transcription start site region 145691			584 bp upstream
Tssr145692	transcription start site region 145692			628 bp upstream
Tssr145693	transcription start site region 145693			833 bp upstream
Tssr145694	transcription start site region 145694			933 bp upstream
Tssr145695	transcription start site region 145695			1576 bp upstream
Tssr149221	transcription start site region 149221			1809 bp upstream
Tssr149222	transcription start site region 149222			1099 bp upstream
Tssr149223	transcription start site region 149223			1080 bp upstream
Tssr149224	transcription start site region 149224			1049 bp upstream
Tssr149225	transcription start site region 149225			951 bp upstream
Tssr149226	transcription start site region 149226			935 bp upstream
Tssr149227	transcription start site region 149227			524 bp upstream
Tssr149228	transcription start site region 149228			429 bp upstream
Tssr149229	transcription start site region 149229			393 bp upstream
Tssr149230	transcription start site region 149230			274 bp upstream
Tssr149231	transcription start site region 149231			65 bp downstream
Tssr149232	transcription start site region 149232			108 bp downstream
Tssr149233	transcription start site region 149233			628 bp downstream
Tssr149234	transcription start site region 149234			1008 bp downstream
Tssr149235	transcription start site region 149235			1305 bp downstream
Tssr149236	transcription start site region 149236			1315 bp downstream
Tssr149237	transcription start site region 149237			1384 bp downstream
Tssr149238	transcription start site region 149238			1475 bp downstream