rs108509663 SNP Detail

Summary

• ID
  rs108509663
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69714777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGTGCTAGG AACACAGGAC AGAAGGATCT CTGAGGCTTG
  CTGGTCAGCC AGTTTAGGTG AATGGGTAAG CTCTAAATAC AGTAAGACCC TGGCTCAAAC
  K
  TATGGAGAGC AACTGAGAAA AACACCCTAT GTTGACCTCT ACCCTCCATA CACACAAGAC
  ACACGAACAT ACACACGCTA AATACATAGC AGACTAGTC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146730634	ENSMUSSNP4244863	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
ss320332411	CHEV_2_69722490	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108509663					SNP	G	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69714777 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11720	CpG island 11720			800 bp proximal
Mettl5	methyltransferase 5, N6-adenosine			Intron
				Noncoding-Transcript-Variant
Mettl5os	methyltransferase 5, opposite strand			1249 bp upstream
Rr397023	regulatory region 397023			452 bp upstream
Rr558487	regulatory region 558487			334 bp distal
Rr558488	regulatory region 558488			1172 bp proximal
Rr558489	regulatory region 558489			1192 bp proximal
Rr558490	regulatory region 558490			1260 bp proximal
Tssr24451	transcription start site region 24451			1124 bp downstream