rs108461414 SNP Detail

Summary

• ID
  rs108461414
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161617102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCAAAACAA CTCCCAAAGT GTTATTTTTC TGCTGCCTTC
  ATCCTGCCCC ACCCCAGCTG CTAATTCTCC TGAGGTCACT CTGCTGGCAA TCTCAGGCTG
  Y
  TCCTTCCTTT TGCCCCCAGC CCTTCCCCCC GCACCCTCCC CGCCCCACCC TGATCATCCA
  GGCCTGCTTT TTCTCACCTG TGACACATTT CTTATCTTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145922238	ENSMUSSNP6130294	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108461414					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161617102 () rs orientation: forward

Symbol	Name	Function Class
Fasl	Fas ligand	1038 bp upstream
Rr421846	regulatory region 421846	862 bp distal
Tssr14586	transcription start site region 14586	1158 bp upstream
Tssr14587	transcription start site region 14587	1077 bp upstream
Tssr14588	transcription start site region 14588	1062 bp upstream
Tssr14589	transcription start site region 14589	1050 bp upstream
Tssr14590	transcription start site region 14590	1037 bp upstream
Tssr14591	transcription start site region 14591	1027 bp upstream