rs108459154 SNP Detail

Summary

• ID
  rs108459154
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:88677262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAAGTCCCG AAGCAGGATT CCACGATTCT TCTCATCTTC
  TGTTCTGTTT TCTTTTGTTT TGTGTTTCTA CCTGCTTGCC TCCAAACACG TATCACAGTC
  W
  GCACGCCACA GTCCCGGTGT TTCACATAAA CACCAGGAGG CAGATGGGGA AAGTTTGAGG
  CCATGGAGCT AAAGGCATGA AGTGGCTGAA AATATTTCA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146939137	ENSMUSSNP5011031	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108459154					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88677262 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14431	CpG island 14431	1264 bp distal
Gm13283	predicted gene 13283	1749 bp upstream
Gm13286	predicted gene 13286	645 bp downstream
Rr595031	regulatory region 595031	1457 bp distal
Rr595032	regulatory region 595032	1897 bp distal
Rr595033	regulatory region 595033	956 bp distal
Rr595034	regulatory region 595034	1383 bp distal
Rr595035	regulatory region 595035	1204 bp distal
Rr595036	regulatory region 595036	862 bp distal
Rr595037	regulatory region 595037	26 bp proximal
Rr595038	regulatory region 595038	808 bp proximal
Rr595039	regulatory region 595039	1046 bp proximal
Rr595040	regulatory region 595040	1542 bp proximal
Rr595041	regulatory region 595041	1705 bp proximal