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rs108454243 SNP Detail
Summary
  • ID
    rs108454243
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr15:78795827 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CAGGG AGTAGCTACA GAGGACAGAG
    R
    AGGCCCTGAG GCTGTGGGTG GGCAT                                      
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
LG/J
SM/J
ss148190141 ENSMUSSNP5076486 ENSEMBL ENSEMBL_Sanger f SNP G A A
ss325025957 CHEV_15_78742057 CHEVERUD SCREENING_POP f SNP A A
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
LG/J
SM/J
rs108454243 SNP G A A A A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:78795827 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
1700027A07Rik RIKEN cDNA 1700027A07 gene 336 bp downstream
Cpgi7305 CpG island 7305 1685 bp proximal
Gm49510 predicted gene, 49510 Intron
Rr505452 regulatory region 505452 469 bp proximal
Rr505453 regulatory region 505453 604 bp proximal
Rr505454 regulatory region 505454 1802 bp proximal
Sh3bp1 SH3-domain binding protein 1 Coding-NonSynonymous
Coding-Synonymous
Intron
Noncoding-Transcript-Variant
Noncoding-Transcript-Variant
Tssr132010 transcription start site region 132010 111 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory